Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015922779.1_cds_XP_016471544.1_63873
CDS Infomation

[gene=LOC107793663] [db_xref=GeneID:107793663] [protein=pre-rRNA-processing protein ESF1-like] [protein_id=XP_016471544.1] [location=complement(join(15144..15453,15590..16278,16682..16810,17725..17887,18103..18335,19428..19502,19604..20233))] [gbkey=CDS]
Sequence

ATGGGGTCCAAAATCAAAGATAAGTGCAAAAAGGGAAAAAGGCCAGCCGATACCTCCACC
GCTGCCGGAGATGAAAGCGGCGGCGGAAATAGAACTGAGAAAAGAATCATCAATGATTCT
CGATTTGCGGCGTTACATTCGGACCCCAGATTTCGCGAGCCGCCGAAGAAAAAGTCGAAA
GTGACAATTGATTCTCGGTTTAACCGTATGTTCACAGATAAAAACTTCGCATCATCAAAA
GCGCCTACTGATATAAGAGGCAGACCCGTTAAGTCCTCCTCCTCCTCTAGAAAAAACCCT
CTAAACCATTATTACCATCTCGAGAAAGAGGGGGAAGAAGAAGAGGGTGAAAAACAGAGG
AAGCAGAAAGAGAAATCAAAGGTTACAGAACCTGAAAGCGAAGAAGAAGATGCAGAAGTA
AGTGAGAGTGAGAGCGGGTCGAGTGAGGAAGAAATTGAGCAACATAAATTGAAGAAAGTT
GGGGCCGAATCATCAGAATCCGAAGAAGAGGAAGATGAGGAGGTGGAAAGTGATGATTCA
TTGGCAAGTACGGAGGATTCTTCTTCGGATTCTGATTCTGATGATGAAATGGGTGAGGTT
TACTCAGAGGAGGAAGATACATTCGTGCAGAAAGAGGATGTGCCTGAAATTGACAAGGAA
ACTAAGAGGCTTGCAATTGTTAACATGGATTGGGGTAGAGTAAAGGCAATTGACTTGTAT
ATGCTATTGAGCTCCTTTCTGCCAAAAGGGGGTCAAATAATATCTGTTGCTGTCTATCCA
TCTGAGTTTGGACTCAAGCGTATGGAAGAGGAGGCTGTCCATGGTCCAGTTGGCCTATTT
GATGATGAAAATGGACAAAATGAAGACAGTGATGATGGTGATGATAATGATGAGATTGAC
AATGAAAAATTACGTGCTTATGAAATGAGTCGACTCAGGTATTATTATGCTGTGGTGGAA
TGTGATTCAAGCGCTACAGCAGATTACCTTTACAAATCTTGCGACGGGGTTGAGTTCGAA
AGAACATCAAACAAATTAGATTTGAGGTTTATTCCAGACTCCATGGAGTTCAAGCATCAA
CCACGGGACATTGCAACGGAGGCCCCTGCAGATTATGAAGGTCTAGATTTTCACACTCGA
GCTCTGCAGCACAGCAATATTGAACTTACATGGGATGAGGATGAGCCACAACGCATCAGG
ACCTTGAAGAGAAAATTCAATGCTGATCAGCTGGCAGATATGGAGTTGAAAGAATTTTTG
GCTTCTGATGAGAGTGAAAGTGATGATAGTGAGGAAGGTGATGACACAGAAGATAAATCT
GCCAAAAAGAAGAAAAAACAAGATAGGTACCGTGCACTGCTCCAGTCTGGGGAGGGTTCA
GATGGAAATAATGAGGACGATGATCAGGACATGGAGGTCACGTTTAACACTGGCTTGGAG
GATCTAAGCAAACGTATCCTAGAAAAGAAGGATAAACAGTCGGAAACTGTATGGGAAGCT
GTTCTCAGAAAGAAAAAAGAGAAAAAGAAGGCCAGGAAAGGTAAGTCCAAGGATTCATCA
GACGATGAGACCAGCGATAGTGATCAAGAACCTATAGAAGAACCTGAGGACTTCTTCATA
GAAGAGCCTTCCAAGGATTCCCAACATCAGAGCACCAGGAAAGGGAAGCAGAGCGTTGAA
GCATCAGAAGAAGCTGAAGCAAGTAGAGCAGAGCTTGAGCTATTACTTGCAGATGACAAG
GGAGGAGATGCTAACTTGAAGGGTTACAACATGAAACCTAAAAAGGCAAAGGGGAAGAAG
GGTAAAGAACTTCCAAATGAGGACAAGTTACCAAGTATCGATTATGAAGATCCACGGTTT
TCATCTCTCTTCAAGTCACCACTCTTCGCATTGGACCCCACAGATCCTCAGTTCAAACGG
AGTGCAGCTTATGCTCGTCAGCTGGCGCAAAAGCAACACAGGGCCGAAGAAGAAATCGTG
AAGACAAAACAACAGCCGGGAATAGCTGCACCGCTGCAGCCATCCAGCACATTAGAGGCA
GTAACAAGTGAAAAATTACAGTCGGATGATTTGCCTTCAAGAAAGGAGAAGCACGAGCTA
TCTTCCTTAGTTAAATCCATTAAGATGAAATCAAAGCAAATATCATTGCCCTCTCAAGTT
AAGGTGGTAGGAAAGAATGAAAAAAGTCGAGCAAGGGCAAAGAAGATCAATGAAGAGCGA
GGAAAATAA

Peptide Sequence

PEP ID

XP_016471544.1
PEP Infomation

PREDICTED: pre-rRNA-processing protein ESF1-like [Nicotiana tabacum]
Sequence

MGSKIKDKCKKGKRPADTSTAAGDESGGGNRTEKRIINDSRFAALHSDPRFREPPKKKSK
VTIDSRFNRMFTDKNFASSKAPTDIRGRPVKSSSSSRKNPLNHYYHLEKEGEEEEGEKQR
KQKEKSKVTEPESEEEDAEVSESESGSSEEEIEQHKLKKVGAESSESEEEEDEEVESDDS
LASTEDSSSDSDSDDEMGEVYSEEEDTFVQKEDVPEIDKETKRLAIVNMDWGRVKAIDLY
MLLSSFLPKGGQIISVAVYPSEFGLKRMEEEAVHGPVGLFDDENGQNEDSDDGDDNDEID
NEKLRAYEMSRLRYYYAVVECDSSATADYLYKSCDGVEFERTSNKLDLRFIPDSMEFKHQ
PRDIATEAPADYEGLDFHTRALQHSNIELTWDEDEPQRIRTLKRKFNADQLADMELKEFL
ASDESESDDSEEGDDTEDKSAKKKKKQDRYRALLQSGEGSDGNNEDDDQDMEVTFNTGLE
DLSKRILEKKDKQSETVWEAVLRKKKEKKKARKGKSKDSSDDETSDSDQEPIEEPEDFFI
EEPSKDSQHQSTRKGKQSVEASEEAEASRAELELLLADDKGGDANLKGYNMKPKKAKGKK
GKELPNEDKLPSIDYEDPRFSSLFKSPLFALDPTDPQFKRSAAYARQLAQKQHRAEEEIV
KTKQQPGIAAPLQPSSTLEAVTSEKLQSDDLPSRKEKHELSSLVKSIKMKSKQISLPSQV
KVVGKNEKSRARAKKINEERGK

Transcript Sequence

Gene sequence data has not been registered.